PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0018.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 315aa    MW: 34680.5 Da    PI: 4.7449
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0018.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35251172103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++lisw+e+g+ f+++ + efa+++LpkyFkh+n++SFvRQLn+YgF+kv  ++         weF+++ F+kg+k
  Kaladp0015s0018.2.p  25 FLTKTYQLVDDPAVDDLISWNEDGSGFIIWRPAEFARDLLPKYFKHNNLSSFVRQLNTYGFRKVVPDR---------WEFANDCFRKGEK 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                           ll++i+r+k +
  Kaladp0015s0018.2.p 106 GLLRDIQRRKMS 117
                          *********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.1E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.4E-4174199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGMPAEQTG ESPAGEMQRA LPTPFLTKTY QLVDDPAVDD LISWNEDGSG FIIWRPAEFA  60
RDLLPKYFKH NNLSSFVRQL NTYGFRKVVP DRWEFANDCF RKGEKGLLRD IQRRKMSQLV  120
ATSPAVTPAV TLPPSTVQLV QISPSNSGEE QMFSSTSSPG GTVLRQVINS TTPELVEENE  180
RLKKENEQMT NELSHLRGLC NNIFVLMSNY GPSGQQDAGN PSMESKQLDL LQSGRFSEEQ  240
GGSSGGGAGA LDNKEVDEDT SPKLFGVSIG AKRMRRCEET ESSERHQQQR ADSQTENNNA  300
QSDMKLEPSQ SGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-262511720123Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476067.11e-120PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_012476068.11e-120PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D37e-93HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0D2R1D01e-120A0A0D2R1D0_G
STRINGVIT_02s0025g04170.t011e-116(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-93HSF family protein